CASCADE-P Tutorial for http://greengenes.llnl.gov/16S The CASCADE-P tools use the prokMSA as their data source. The prokMSA is a multiple sequence alignment of the publicly available 16S rDNA sequences. Some functions require the user to indicate which branch(es) of the phylogenetic tree they wish to examine. The “Browse” function allows the user to find and select… Continue reading Glossary of CASCADE-P Tutorial